Variant report

Variant	rs9939974
Chromosome Location	chr16:13000279-13000280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12999904..13002334-chr16:13005037..13006799,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13332101	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13333158	1.00[AMR][1000 genomes]
rs13334654	1.00[AMR][1000 genomes]
rs13335693	1.00[YRI][hapmap]
rs9922426	1.00[AMR][1000 genomes]
rs9926045	1.00[AMR][1000 genomes]
rs9927063	1.00[AMR][1000 genomes]
rs9933205	1.00[AMR][1000 genomes]
rs9934013	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051607	chr16:12522130-13347676	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv542750	chr16:12522130-13347676	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv869284	chr16:12735729-13533462	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv833142	chr16:12922572-13099421	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12998200-13001400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:12998200-13001400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr16:12998400-13001800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr16:12998400-13002400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:12998400-13012000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:12998600-13000400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr16:12998600-13001200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr16:12998600-13001400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr16:12998600-13001400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr16:12998600-13007400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr16:12998600-13011600	Weak transcription	HMEC	breast
12	chr16:12999000-13001200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr16:12999200-13000600	Enhancers	HSMMtube	muscle
14	chr16:12999200-13001800	Enhancers	Fetal Brain Male	brain
15	chr16:12999200-13011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr16:12999400-13000400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr16:12999400-13011000	Weak transcription	Fetal Brain Female	brain
18	chr16:12999600-13000400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr16:12999600-13001800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr16:12999800-13000400	Transcr. at gene 5' and 3'	HSMM	muscle
21	chr16:12999800-13001400	Enhancers	Brain Anterior Caudate	brain
22	chr16:13000000-13000600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr16:13000000-13000800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr16:13000000-13001200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr16:13000200-13000400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr16:13000200-13000400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr16:13000200-13000400	Bivalent Enhancer	HepG2	liver
28	chr16:13000200-13001400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr16:13000200-13002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr16:13000200-13008600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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