Variant report

Variant	rs9934013
Chromosome Location	chr16:13010483-13010484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:13009397..13012121-chr16:13020176..13022098,2	K562	blood:
2	chr16:13003309..13006756-chr16:13008585..13010850,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13332101	1.00[AMR][1000 genomes]
rs13334654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13335693	0.82[YRI][hapmap]
rs9922426	1.00[AMR][1000 genomes]
rs9926045	1.00[AMR][1000 genomes]
rs9933205	1.00[AMR][1000 genomes]
rs9939974	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051607	chr16:12522130-13347676	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv542750	chr16:12522130-13347676	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv869284	chr16:12735729-13533462	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv833142	chr16:12922572-13099421	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12998400-13012000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr16:12998600-13011600	Weak transcription	HMEC	breast
3	chr16:12999200-13011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:12999400-13011000	Weak transcription	Fetal Brain Female	brain
5	chr16:13001800-13010600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr16:13003000-13010600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:13005000-13011000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr16:13005000-13011600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr16:13005200-13010600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:13005200-13010600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr16:13005200-13011400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr16:13005400-13010600	Weak transcription	HSMMtube	muscle
13	chr16:13005600-13010600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr16:13005800-13010800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr16:13006000-13013400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr16:13009000-13013800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:13010000-13011000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:13010400-13010800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr16:13010400-13010800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr16:13010400-13011000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
21	chr16:13010400-13012200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr16:13010400-13012200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr16:13010400-13012600	Genic enhancers	HSMM	muscle

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