Variant report

Variant	rs13339390
Chromosome Location	chr16:71539252-71539253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10438561	1.00[AMR][1000 genomes]
rs13333851	1.00[AMR][1000 genomes]
rs13336790	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339307	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620690	0.83[AMR][1000 genomes]
rs28653370	0.81[AFR][1000 genomes]
rs28676959	0.81[AFR][1000 genomes]
rs28709366	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754484	0.83[AFR][1000 genomes]
rs9923065	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9927819	0.82[ASW][hapmap]
rs9930279	1.00[AMR][1000 genomes]
rs9933647	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv906892	chr16:71526720-71570413	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71537800-71543200	Weak transcription	Pancreas	Pancrea
2	chr16:71538800-71539400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:71539200-71540000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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