Variant report
| Variant | rs13336790 |
|---|---|
| Chromosome Location | chr16:71474197-71474198 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000167377 | Chromatin interaction |
| ENSG00000247324 | Chromatin interaction |
| ENSG00000260734 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10438561 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13333851 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13339307 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13339390 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28537877 | 0.83[AFR][1000 genomes] |
| rs28620690 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs28709366 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73573696 | 0.82[AFR][1000 genomes] |
| rs9923065 | 0.83[AMR][1000 genomes] |
| rs9927819 | 0.88[AFR][1000 genomes] |
| rs9930279 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9930642 | 0.83[AFR][1000 genomes] |
| rs9933647 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064435 | chr16:71440719-71488771 | Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71473800-71474600 | Weak transcription | Spleen | Spleen |
