Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71458616..71460570-chr16:71466818..71468399,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF23-2	chr16:71466917-71467279	XLOC_011999

Variant related genes	Relation type
ENSG00000261348	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10438561	0.90[AFR][1000 genomes]
rs13330287	1.00[AMR][1000 genomes]
rs13331410	0.87[AMR][1000 genomes]
rs13333851	0.81[AFR][1000 genomes]
rs13336790	0.83[AFR][1000 genomes]
rs13338889	0.83[AFR][1000 genomes]
rs16973245	1.00[AMR][1000 genomes]
rs28537877	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28620690	0.86[AFR][1000 genomes]
rs28676959	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709366	0.82[AFR][1000 genomes]
rs28754484	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57343221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7194638	0.82[YRI][hapmap]
rs73573696	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73575922	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9923065	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9927819	0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9930102	0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930279	0.86[AFR][1000 genomes]
rs9933647	0.81[YRI][hapmap]
rs9940204	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71467000-71467200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: