Variant report

Variant	rs9940204
Chromosome Location	chr16:71485663-71485664
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71482210..71487712-chr16:71492894..71496267,8	K562	blood:
2	chr16:71485371..71491957-chr16:71492064..71497509,13	K562	blood:
3	chr16:71480853..71482680-chr16:71484634..71486156,2	K562	blood:

Variant related genes	Relation type
ENSG00000167377	Chromatin interaction
ENSG00000247324	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13330287	0.87[AMR][1000 genomes]
rs13331410	1.00[AMR][1000 genomes]
rs13337117	0.88[YRI][hapmap];0.89[AMR][1000 genomes]
rs13338889	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16973245	0.87[AMR][1000 genomes]
rs28537877	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676959	0.87[AMR][1000 genomes]
rs28709366	0.80[AFR][1000 genomes]
rs28754484	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57343221	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73573696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583011	0.89[AMR][1000 genomes]
rs9927819	0.92[ASW][hapmap];0.85[MKK][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930102	0.88[YRI][hapmap];0.87[AMR][1000 genomes]
rs9930642	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9939096	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71478200-71487800	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr16:71479400-71489200	ZNF genes & repeats	Liver	Liver
3	chr16:71479600-71487800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:71479600-71488000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr16:71480000-71487000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
6	chr16:71480600-71487800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr16:71480600-71488000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:71480600-71488200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:71480600-71491000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr16:71480800-71486000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
11	chr16:71480800-71486600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr16:71480800-71486800	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr16:71480800-71486800	ZNF genes & repeats	NH-A	brain
14	chr16:71480800-71487200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr16:71480800-71487600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
16	chr16:71480800-71488200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:71481000-71486000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr16:71481000-71486000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr16:71481000-71486600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr16:71481000-71486800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr16:71481000-71487000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr16:71481000-71487600	ZNF genes & repeats	Psoas Muscle	Psoas
23	chr16:71481000-71487800	ZNF genes & repeats	Fetal Lung	lung
24	chr16:71481000-71489000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr16:71481200-71486000	ZNF genes & repeats	HSMM	muscle
26	chr16:71481200-71487600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr16:71481200-71487800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr16:71481400-71487200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr16:71481600-71487000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
30	chr16:71481600-71487000	ZNF genes & repeats	NHDF-Ad	bronchial
31	chr16:71481600-71487800	ZNF genes & repeats	Brain Hippocampus Middle	brain
32	chr16:71481600-71490400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr16:71481600-71493000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr16:71481800-71486000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr16:71481800-71486000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
36	chr16:71481800-71486200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chr16:71481800-71486400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr16:71481800-71486800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
39	chr16:71481800-71487000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
40	chr16:71481800-71487200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr16:71481800-71487800	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr16:71481800-71487800	ZNF genes & repeats	Colon Smooth Muscle	Colon
43	chr16:71481800-71488000	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr16:71481800-71491000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr16:71482000-71485800	ZNF genes & repeats	Small Intestine	intestine
46	chr16:71482000-71486000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr16:71482000-71486000	ZNF genes & repeats	Colonic Mucosa	Colon
48	chr16:71482000-71486200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
49	chr16:71482000-71486200	ZNF genes & repeats	Osteobl	bone
50	chr16:71482000-71486800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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