Variant report
| Variant | rs9939096 |
|---|---|
| Chromosome Location | chr16:71527866-71527867 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71527669..71529806-chr16:71531377..71533861,2 | MCF-7 | breast: | |
| 2 | chr16:71491873..71496130-chr16:71527502..71532153,5 | K562 | blood: | |
| 3 | chr16:71527695..71528790-chr16:71570884..71571958,3 | MCF-7 | breast: | |
| 4 | chr16:71521453..71523218-chr16:71526940..71528952,2 | MCF-7 | breast: | |
| 5 | chr16:71518517..71520034-chr16:71526306..71528350,2 | K562 | blood: | |
| 6 | chr16:71445857..71447501-chr16:71527654..71528626,7 | MCF-7 | breast: | |
| 7 | chr16:71494254..71496251-chr16:71526160..71529002,3 | K562 | blood: | |
| 8 | chr16:71513053..71513638-chr16:71527708..71528224,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261611 | TF binding region |
| ZNF19 | TF binding region |
| ENSG00000261611 | Chromatin interaction |
| ENSG00000167377 | Chromatin interaction |
| ENSG00000157429 | Chromatin interaction |
| ENSG00000247324 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs13330287 | 0.81[AFR][1000 genomes] |
| rs13337117 | 0.83[AFR][1000 genomes] |
| rs13338889 | 0.82[AFR][1000 genomes] |
| rs28676959 | 0.87[AFR][1000 genomes] |
| rs28754484 | 0.87[AFR][1000 genomes] |
| rs57343221 | 0.87[AFR][1000 genomes] |
| rs73573696 | 0.84[AFR][1000 genomes] |
| rs9930102 | 0.83[AFR][1000 genomes] |
| rs9940204 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv906892 | chr16:71526720-71570413 | Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
