Variant report

Variant	rs73573696
Chromosome Location	chr16:71478068-71478069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13330287	0.87[AMR][1000 genomes]
rs13331410	1.00[AMR][1000 genomes]
rs13336790	0.82[AFR][1000 genomes]
rs13337117	0.89[AMR][1000 genomes]
rs13338889	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16973245	0.87[AMR][1000 genomes]
rs28537877	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676959	0.87[AMR][1000 genomes]
rs28709366	0.80[AFR][1000 genomes]
rs28754484	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57343221	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73575922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583011	0.89[AMR][1000 genomes]
rs9927819	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930102	0.87[AMR][1000 genomes]
rs9930642	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9939096	0.84[AFR][1000 genomes]
rs9940204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71474800-71478400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71475000-71479600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:71476400-71478200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:71476800-71482000	Weak transcription	HepG2	liver
5	chr16:71477600-71478400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
6	chr16:71477800-71478200	Active TSS	Fetal Heart	heart
7	chr16:71477800-71478400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
8	chr16:71478000-71478400	ZNF genes & repeats	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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