Variant report

Variant	rs73575922
Chromosome Location	chr16:71494575-71494576
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr16:71494193-71494588	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr16:71494181-71494601	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr16:71493796-71495101	U87	brain:	n/a	n/a
4	FOS	chr16:71494176-71494587	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr16:71494186-71494684	U87	brain:	n/a	n/a
6	POLR2A	chr16:71494186-71494702	U87	brain:	n/a	n/a
7	POLR2A	chr16:71493790-71496486	U87	brain:	n/a	n/a
8	POLR2A	chr16:71494156-71496500	IMR90	lung:	n/a	n/a
9	CEBPB	chr16:71494234-71494637	IMR90	lung:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71485371..71491957-chr16:71492064..71497509,13	K562	blood:
2	chr16:71494034..71497645-chr16:71516569..71520102,12	K562	blood:
3	chr16:71463484..71466764-chr16:71493078..71496827,4	MCF-7	breast:
4	chr16:71490751..71498047-chr16:71514421..71521729,20	MCF-7	breast:
5	chr16:71322248..71324099-chr16:71492926..71495428,2	K562	blood:
6	chr16:71493295..71494894-chr16:71504109..71506023,2	MCF-7	breast:
7	chr16:71492931..71495476-chr16:71534966..71536593,2	K562	blood:
8	chr16:71492243..71500079-chr16:71512817..71521299,31	MCF-7	breast:
9	chr16:71487978..71492259-chr16:71492827..71496747,5	K562	blood:
10	chr16:71492651..71498511-chr16:71515020..71523604,17	K562	blood:
11	chr16:71477364..71480165-chr16:71494025..71496473,2	K562	blood:
12	chr16:71482210..71487712-chr16:71492894..71496267,8	K562	blood:
13	chr16:71494529..71496069-chr16:71521336..71523844,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000247324	TF binding region
ZNF23	TF binding region
ENSG00000180917	Chromatin interaction
ENSG00000261611	Chromatin interaction
ENSG00000167377	Chromatin interaction
ENSG00000157429	Chromatin interaction
ENSG00000262008	Chromatin interaction
ENSG00000260734	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13330287	0.87[AMR][1000 genomes]
rs13331410	1.00[AMR][1000 genomes]
rs13337117	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13338889	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16973245	0.87[AMR][1000 genomes]
rs28537877	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676959	0.87[AMR][1000 genomes]
rs28754484	0.87[AMR][1000 genomes]
rs57343221	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73573696	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583011	0.89[AMR][1000 genomes]
rs9927819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930102	0.87[AMR][1000 genomes]
rs9930642	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9940204	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71484600-71494600	Weak transcription	HUVEC	blood vessel
2	chr16:71484600-71495200	Weak transcription	Fetal Heart	heart
3	chr16:71484600-71495400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr16:71487200-71495400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr16:71487200-71495400	Weak transcription	Stomach Mucosa	stomach
6	chr16:71487600-71494800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:71487600-71494800	Weak transcription	K562	blood
8	chr16:71487800-71494600	Weak transcription	Hela-S3	cervix
9	chr16:71487800-71494800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:71488000-71494800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr16:71488000-71495000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:71488000-71495400	Weak transcription	Fetal Thymus	thymus
13	chr16:71488200-71495400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:71488600-71495400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr16:71489000-71495000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:71489000-71495400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr16:71489200-71495200	Weak transcription	Thymus	Thymus
18	chr16:71489400-71495200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr16:71489600-71495400	Weak transcription	Small Intestine	intestine
20	chr16:71489800-71495400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr16:71490200-71494800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr16:71490200-71495200	Weak transcription	Fetal Kidney	kidney
23	chr16:71490400-71494800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr16:71490400-71495200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr16:71490400-71495400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr16:71490400-71495400	Weak transcription	Placenta	Placenta
27	chr16:71490600-71494600	Weak transcription	Adipose Nuclei	Adipose
28	chr16:71490600-71494600	Weak transcription	A549	lung
29	chr16:71490600-71494800	Weak transcription	Primary T cells from cord blood	blood
30	chr16:71490600-71495000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr16:71490600-71495000	Weak transcription	Right Ventricle	heart
32	chr16:71490600-71495200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr16:71490600-71495200	Weak transcription	Brain Angular Gyrus	brain
34	chr16:71490600-71495200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr16:71490600-71495200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr16:71490600-71495400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr16:71490600-71495400	Weak transcription	Colonic Mucosa	Colon
38	chr16:71490600-71495400	Weak transcription	Pancreas	Pancrea
39	chr16:71490600-71495400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr16:71490800-71494600	Weak transcription	Liver	Liver
41	chr16:71490800-71494600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr16:71490800-71494800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr16:71490800-71494800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr16:71490800-71494800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr16:71490800-71494800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr16:71490800-71494800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr16:71490800-71494800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr16:71490800-71494800	Weak transcription	Brain Substantia Nigra	brain
49	chr16:71490800-71494800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr16:71490800-71494800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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