Variant report

Variant	rs16973245
Chromosome Location	chr16:71525206-71525207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr16:71525055-71527532	PBDE	blood:	n/a	n/a
2	RCOR1	chr16:71524882-71525354	K562	blood:	n/a	n/a
3	TAL1	chr16:71525165-71525284	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71496289..71499159-chr16:71523372..71525496,2	K562	blood:
2	chr16:71504965..71506764-chr16:71524563..71526143,2	K562	blood:
3	chr16:71516946..71520167-chr16:71520825..71527785,6	MCF-7	breast:
4	chr16:71511822..71513455-chr16:71524047..71525825,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000261611	TF binding region
ZNF19	TF binding region
ENSG00000167377	Chromatin interaction
ENSG00000157429	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13330287	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331410	0.87[AMR][1000 genomes]
rs28537877	0.87[AMR][1000 genomes]
rs28676959	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57343221	1.00[AMR][1000 genomes]
rs73573696	0.87[AMR][1000 genomes]
rs73575922	0.87[AMR][1000 genomes]
rs9923065	0.85[AMR][1000 genomes]
rs9927819	0.87[YRI][hapmap];0.87[AMR][1000 genomes]
rs9930102	0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930642	1.00[AMR][1000 genomes]
rs9940204	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71524200-71525800	Enhancers	K562	blood
2	chr16:71525200-71527200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr16:71525200-71527400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links