Variant report

Variant	rs28676959
Chromosome Location	chr16:71516323-71516324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71490751..71498047-chr16:71514421..71521729,20	MCF-7	breast:
2	chr16:71492243..71500079-chr16:71512817..71521299,31	MCF-7	breast:
3	chr16:71515385..71518984-chr16:71658944..71661712,3	MCF-7	breast:
4	chr16:71515755..71518920-chr16:71520634..71524924,4	K562	blood:
5	chr16:71492651..71498511-chr16:71515020..71523604,17	K562	blood:

Variant related genes	Relation type
ENSG00000157429	Chromatin interaction
ENSG00000167377	Chromatin interaction
ENSG00000140832	Chromatin interaction
ENSG00000247324	Chromatin interaction
ENSG00000261611	Chromatin interaction
ENSG00000260593	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13330287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331410	0.87[AMR][1000 genomes]
rs13339307	0.81[AFR][1000 genomes]
rs13339390	0.81[AFR][1000 genomes]
rs16973245	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537877	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28653370	0.82[AFR][1000 genomes]
rs28754484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57343221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573696	0.87[AMR][1000 genomes]
rs73575922	0.87[AMR][1000 genomes]
rs9923065	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9927819	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9930102	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930642	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933647	0.87[AFR][1000 genomes]
rs9939096	0.87[AFR][1000 genomes]
rs9940204	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71497000-71517400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr16:71497000-71517400	Weak transcription	Fetal Heart	heart
3	chr16:71497000-71517600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr16:71502800-71517400	Weak transcription	Dnd41	blood
5	chr16:71506400-71517400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:71507200-71517800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:71507400-71517800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:71507600-71517400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:71507600-71517400	Weak transcription	Fetal Brain Male	brain
10	chr16:71508400-71517600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr16:71508400-71517600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:71508800-71517800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr16:71509600-71517600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr16:71509800-71517800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr16:71509800-71517800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr16:71510000-71517600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr16:71510000-71517800	Weak transcription	Esophagus	oesophagus
18	chr16:71510200-71517600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr16:71510200-71518000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr16:71510600-71517600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr16:71510600-71517600	Weak transcription	NHEK	skin
22	chr16:71510600-71517800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:71510600-71518000	Weak transcription	Gastric	stomach
24	chr16:71510800-71517400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr16:71510800-71517600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr16:71510800-71518000	Weak transcription	Small Intestine	intestine
27	chr16:71511000-71517400	Weak transcription	NHDF-Ad	bronchial
28	chr16:71511200-71517600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr16:71511200-71517600	Weak transcription	HMEC	breast
30	chr16:71511200-71517800	Weak transcription	NH-A	brain
31	chr16:71511400-71517800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr16:71511800-71517400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr16:71511800-71517400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr16:71511800-71517600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr16:71511800-71517600	Weak transcription	HUVEC	blood vessel
36	chr16:71512000-71517200	Weak transcription	GM12878-XiMat	blood
37	chr16:71512000-71517400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr16:71512000-71517400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr16:71512000-71517400	Weak transcription	Psoas Muscle	Psoas
40	chr16:71512200-71517600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr16:71512200-71518000	Weak transcription	Placenta	Placenta
42	chr16:71512400-71517400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr16:71512400-71517400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr16:71512400-71517400	Weak transcription	A549	lung
45	chr16:71512400-71517800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr16:71512600-71517400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr16:71512600-71517400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr16:71512600-71517400	Weak transcription	Fetal Brain Female	brain
49	chr16:71512600-71517400	Weak transcription	Fetal Lung	lung
50	chr16:71512600-71517400	Weak transcription	Osteobl	bone

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