Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1020686	0.82[EUR][1000 genomes]
rs1037595	0.82[EUR][1000 genomes]
rs1037596	0.82[EUR][1000 genomes]
rs1124176	0.87[JPT][hapmap]
rs1334172	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1334183	0.84[AMR][1000 genomes]
rs1455406	0.82[EUR][1000 genomes]
rs1572182	0.89[ASN][1000 genomes]
rs4142902	0.89[ASN][1000 genomes]
rs4379940	0.90[ASN][1000 genomes]
rs4387460	0.83[JPT][hapmap]
rs4415893	0.87[JPT][hapmap]
rs4432131	0.82[JPT][hapmap]
rs4627190	0.89[ASN][1000 genomes]
rs4771593	0.82[EUR][1000 genomes]
rs6492194	0.89[ASN][1000 genomes]
rs7332979	0.82[EUR][1000 genomes]
rs7987813	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs8002849	0.96[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap]
rs9301379	0.89[ASN][1000 genomes]
rs9514980	0.87[JPT][hapmap]
rs9515057	0.89[ASN][1000 genomes]
rs9515060	0.90[ASN][1000 genomes]
rs9521103	0.82[EUR][1000 genomes]
rs9521138	0.95[CEU][hapmap];0.87[JPT][hapmap]
rs9521343	0.89[ASN][1000 genomes]
rs9521347	0.89[ASN][1000 genomes]
rs9521348	0.89[ASN][1000 genomes]
rs9521351	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1051177	chr13:89219432-89359036	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89221600-89233000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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