Variant report

Variant	rs4415893
Chromosome Location	chr13:89193651-89193652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-7	chr13:89193119-89193698	XLOC_010466
2	lnc-SLITRK5-7	chr13:89193084-89193698	NONHSAT034615
3	lnc-SLITRK5-7	chr13:89193084-89193698	NONHSAT034614

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1020686	0.93[ASN][1000 genomes]
rs1037595	0.92[ASN][1000 genomes]
rs1037596	0.93[ASN][1000 genomes]
rs1124176	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1334172	0.93[ASN][1000 genomes]
rs1455406	0.93[ASN][1000 genomes]
rs1572182	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1760825	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1760826	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4142902	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4379940	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4387460	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4432131	0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4627190	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4771593	0.93[ASN][1000 genomes]
rs6492194	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7332979	0.91[ASN][1000 genomes]
rs7987813	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs8002849	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9301379	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9514921	0.86[ASN][1000 genomes]
rs9514980	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9515057	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9515060	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9521103	0.92[ASN][1000 genomes]
rs9521138	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9521343	0.84[AMR][1000 genomes]
rs9521347	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9521348	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9521351	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9587692	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900815	chr13:89098616-89216190	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3443995	chr13:89192251-89196549	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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