Variant report
| Variant | rs4432131 |
|---|---|
| Chromosome Location | chr13:89193605-89193606 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SLITRK5-7 | chr13:89193119-89193698 | XLOC_010466 |
| 2 | lnc-SLITRK5-7 | chr13:89193084-89193698 | NONHSAT034615 |
| 3 | lnc-SLITRK5-7 | chr13:89193084-89193698 | NONHSAT034614 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1020686 | 0.90[ASN][1000 genomes] |
| rs1037595 | 0.90[ASN][1000 genomes] |
| rs1037596 | 0.90[ASN][1000 genomes] |
| rs1124176 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs1334172 | 0.90[ASN][1000 genomes] |
| rs1455406 | 0.90[ASN][1000 genomes] |
| rs1760825 | 0.91[ASN][1000 genomes] |
| rs1760826 | 0.91[ASN][1000 genomes] |
| rs4387460 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs4415893 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs4771593 | 0.90[ASN][1000 genomes] |
| rs7332979 | 0.88[ASN][1000 genomes] |
| rs7987813 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs8002849 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs9514921 | 0.83[ASN][1000 genomes] |
| rs9514980 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs9521103 | 0.90[ASN][1000 genomes] |
| rs9521138 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs9587692 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900815 | chr13:89098616-89216190 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv870345 | chr13:89164439-89295782 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3443995 | chr13:89192251-89196549 | Inactive region | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
