Variant report

Variant	esv3443995
Chromosome Location	chr13:89192251-89196549
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr13:89194329-89194594	K562	blood:	n/a	n/a
2	MAFF	chr13:89194278-89194634	HepG2	liver:	n/a	n/a
3	MAFK	chr13:89194365-89194640	Hela-S3	cervix:	n/a	n/a
4	MAFK	chr13:89194286-89194605	HepG2	liver:	n/a	n/a
5	MAFK	chr13:89194279-89194643	HepG2	liver:	n/a	n/a
6	MAFK	chr13:89194329-89194571	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAFK	chr13:89194280-89194643	IMR90	lung:	n/a	n/a
8	MAFK	chr13:89194334-89194595	K562	blood:	n/a	n/a
9	POLR2A	chr13:89195684-89195708	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-7	chr13:89194157-89194227	NONHSAT034615
2	lnc-SLITRK5-7	chr13:89193084-89193698	NONHSAT034615
3	lnc-SLITRK5-7	chr13:89193119-89193698	XLOC_010466
4	lnc-SLITRK5-7	chr13:89194525-89194761	XLOC_010466
5	lnc-SLITRK5-7	chr13:89194540-89194679	XLOC_010466
6	lnc-SLITRK5-7	chr13:89193084-89193698	NONHSAT034614
7	lnc-SLITRK5-7	chr13:89194157-89194227	NONHSAT034614
8	lnc-SLITRK5-7	chr13:89194157-89194227	XLOC_010466

No data

Variant related genes	Relation type
LINC00433	TF binding region
MUC17	miRNA target sites

Extended variants
information (count: 67 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545379794	chr13:89193087-89193088	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs563878954	chr13:89193136-89193137	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs34952405	chr13:89193144-89193145	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs181325381	chr13:89193154-89193155	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs183833713	chr13:89193158-89193159	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs373959007	chr13:89193170-89193171	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs376519409	chr13:89193209-89193210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs9559491	chr13:89193218-89193219	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs188242992	chr13:89193263-89193264	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs200954786	chr13:89193276-89193277	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs561696735	chr13:89193277-89193278	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs202107972	chr13:89193278-89193279	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs200431889	chr13:89193282-89193283	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs149794318	chr13:89193283-89193284	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs7994973	chr13:89193310-89193311	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs149880920	chr13:89193315-89193316	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs144944077	chr13:89193319-89193320	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs559667980	chr13:89193322-89193323	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs9559492	chr13:89193343-89193344	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs180738947	chr13:89193355-89193356	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs552604276	chr13:89193381-89193382	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs186029006	chr13:89193429-89193430	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs192056081	chr13:89193470-89193471	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs550366106	chr13:89193471-89193472	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs149072489	chr13:89193477-89193478	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs7491890	chr13:89193479-89193480	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs76641539	chr13:89193482-89193483	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs572396241	chr13:89193509-89193510	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs527688403	chr13:89193555-89193556	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs376920133	chr13:89193558-89193559	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs146736930	chr13:89193570-89193571	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs557289573	chr13:89193585-89193586	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs4432131	chr13:89193605-89193606	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs7491918	chr13:89193619-89193620	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs140351579	chr13:89193629-89193630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs4516077	chr13:89193635-89193636	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs4415893	chr13:89193651-89193652	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs559728563	chr13:89193652-89193653	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs182394624	chr13:89193676-89193677	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs552571576	chr13:89194157-89194158	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs557352522	chr13:89194180-89194181	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs78601968	chr13:89194196-89194197	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs537033331	chr13:89194218-89194219	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs9514979	chr13:89194223-89194224	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs9514980	chr13:89194343-89194344	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs570480194	chr13:89194351-89194352	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs545298217	chr13:89194356-89194357	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs145508838	chr13:89194361-89194362	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs371033864	chr13:89194365-89194366	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs543790882	chr13:89194378-89194379	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Non-small cell lung cancer	16651412	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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