Variant report

Variant	rs4516077
Chromosome Location	chr13:89193635-89193636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-7	chr13:89193119-89193698	XLOC_010466
2	lnc-SLITRK5-7	chr13:89193084-89193698	NONHSAT034615
3	lnc-SLITRK5-7	chr13:89193084-89193698	NONHSAT034614

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1124177	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12429205	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12584429	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12875484	0.93[ASN][1000 genomes]
rs12877576	0.84[ASN][1000 genomes]
rs1334171	0.93[ASN][1000 genomes]
rs1334176	0.84[ASN][1000 genomes]
rs1334177	0.80[ASN][1000 genomes]
rs1334187	0.87[ASN][1000 genomes]
rs1455405	0.93[ASN][1000 genomes]
rs1577146	0.84[ASN][1000 genomes]
rs2124259	0.93[ASN][1000 genomes]
rs2347147	0.87[ASN][1000 genomes]
rs2881561	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs3963390	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs4272895	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4531598	0.85[ASN][1000 genomes]
rs4772983	0.93[ASN][1000 genomes]
rs7319397	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7325451	0.91[ASN][1000 genomes]
rs7491890	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7491918	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9514926	0.83[ASN][1000 genomes]
rs9514939	0.93[ASN][1000 genomes]
rs9514979	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9521076	0.93[ASN][1000 genomes]
rs9521104	0.85[ASN][1000 genomes]
rs9521105	0.93[ASN][1000 genomes]
rs9521106	0.93[ASN][1000 genomes]
rs9521107	0.89[ASN][1000 genomes]
rs9521140	0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9521352	0.87[ASN][1000 genomes]
rs9521387	0.84[ASN][1000 genomes]
rs9521394	0.84[ASN][1000 genomes]
rs9559491	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9559492	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9587704	0.83[ASN][1000 genomes]
rs9587710	0.88[ASN][1000 genomes]
rs9587714	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900815	chr13:89098616-89216190	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3443995	chr13:89192251-89196549	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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