Variant report

Variant	rs2347147
Chromosome Location	chr13:89226946-89226947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1124177	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12429205	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12584429	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12875484	0.93[ASN][1000 genomes]
rs12877576	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334171	0.93[ASN][1000 genomes]
rs1334176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334177	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1334187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413457	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1455405	0.93[ASN][1000 genomes]
rs1577146	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2124259	0.93[ASN][1000 genomes]
rs2881561	1.00[JPT][hapmap]
rs3963390	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4272895	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4516077	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4531598	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4772983	0.93[ASN][1000 genomes]
rs56250140	0.88[ASN][1000 genomes]
rs7319397	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7325451	0.92[ASN][1000 genomes]
rs7491890	0.92[ASN][1000 genomes]
rs7491918	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9514926	0.84[ASN][1000 genomes]
rs9514939	0.93[ASN][1000 genomes]
rs9514979	0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9521076	0.93[ASN][1000 genomes]
rs9521104	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9521105	0.93[ASN][1000 genomes]
rs9521106	0.93[ASN][1000 genomes]
rs9521107	0.90[ASN][1000 genomes]
rs9521140	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9521352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9521387	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9521394	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9559491	0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9559492	0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9587704	0.84[ASN][1000 genomes]
rs9587710	0.88[ASN][1000 genomes]
rs9587714	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1051177	chr13:89219432-89359036	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3410001	chr13:89226125-89227163	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv995491	chr13:89226895-89229609	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89221600-89233000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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