Variant report
| Variant | rs56250140 |
|---|---|
| Chromosome Location | chr13:89230829-89230830 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12875484 | 0.81[ASN][1000 genomes] |
| rs12877576 | 0.92[ASN][1000 genomes] |
| rs1334171 | 0.81[ASN][1000 genomes] |
| rs1334176 | 0.92[ASN][1000 genomes] |
| rs1334177 | 0.88[ASN][1000 genomes] |
| rs1334187 | 0.88[ASN][1000 genomes] |
| rs1455405 | 0.81[ASN][1000 genomes] |
| rs1577146 | 0.92[ASN][1000 genomes] |
| rs2124259 | 0.81[ASN][1000 genomes] |
| rs2347147 | 0.88[ASN][1000 genomes] |
| rs4772983 | 0.81[ASN][1000 genomes] |
| rs7491890 | 0.80[ASN][1000 genomes] |
| rs9514939 | 0.81[ASN][1000 genomes] |
| rs9514979 | 0.80[ASN][1000 genomes] |
| rs9521076 | 0.81[ASN][1000 genomes] |
| rs9521105 | 0.81[ASN][1000 genomes] |
| rs9521106 | 0.81[ASN][1000 genomes] |
| rs9521352 | 0.88[ASN][1000 genomes] |
| rs9521387 | 0.92[ASN][1000 genomes] |
| rs9521394 | 0.92[ASN][1000 genomes] |
| rs9559491 | 0.80[ASN][1000 genomes] |
| rs9559492 | 0.80[ASN][1000 genomes] |
| rs9587714 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv870345 | chr13:89164439-89295782 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1051177 | chr13:89219432-89359036 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900816 | chr13:89224649-89392881 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:89221600-89233000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
