Variant report
| Variant | rs7491890 |
|---|---|
| Chromosome Location | chr13:89193479-89193480 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SLITRK5-7 | chr13:89193119-89193698 | XLOC_010466 |
| 2 | lnc-SLITRK5-7 | chr13:89193084-89193698 | NONHSAT034615 |
| 3 | lnc-SLITRK5-7 | chr13:89193084-89193698 | NONHSAT034614 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12875484 | 0.98[ASN][1000 genomes] |
| rs12877576 | 0.89[ASN][1000 genomes] |
| rs1334171 | 0.98[ASN][1000 genomes] |
| rs1334176 | 0.89[ASN][1000 genomes] |
| rs1334177 | 0.85[ASN][1000 genomes] |
| rs1334187 | 0.92[ASN][1000 genomes] |
| rs1455405 | 0.98[ASN][1000 genomes] |
| rs1577146 | 0.89[ASN][1000 genomes] |
| rs2124259 | 0.98[ASN][1000 genomes] |
| rs2347147 | 0.92[ASN][1000 genomes] |
| rs4516077 | 0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4531598 | 0.90[ASN][1000 genomes] |
| rs4772983 | 0.98[ASN][1000 genomes] |
| rs56250140 | 0.80[ASN][1000 genomes] |
| rs7325451 | 0.97[ASN][1000 genomes] |
| rs7491918 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9514926 | 0.88[ASN][1000 genomes] |
| rs9514939 | 0.98[ASN][1000 genomes] |
| rs9514979 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9521076 | 0.98[ASN][1000 genomes] |
| rs9521104 | 0.90[ASN][1000 genomes] |
| rs9521105 | 0.98[ASN][1000 genomes] |
| rs9521106 | 0.98[ASN][1000 genomes] |
| rs9521107 | 0.95[ASN][1000 genomes] |
| rs9521352 | 0.92[ASN][1000 genomes] |
| rs9521387 | 0.89[ASN][1000 genomes] |
| rs9521394 | 0.89[ASN][1000 genomes] |
| rs9559491 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9559492 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9587704 | 0.88[ASN][1000 genomes] |
| rs9587710 | 0.93[ASN][1000 genomes] |
| rs9587714 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900815 | chr13:89098616-89216190 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv870345 | chr13:89164439-89295782 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3443995 | chr13:89192251-89196549 | Inactive region | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
