Variant report
| Variant | rs13345090 |
|---|---|
| Chromosome Location | chr18:25432784-25432785 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:25428285..25431235-chr18:25432716..25435281,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10409266 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10410433 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10415824 | 1.00[AMR][1000 genomes] |
| rs10416483 | 1.00[AMR][1000 genomes] |
| rs10416833 | 1.00[AMR][1000 genomes] |
| rs10418621 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11878949 | 1.00[AMR][1000 genomes] |
| rs11881743 | 1.00[AMR][1000 genomes] |
| rs11881791 | 1.00[AMR][1000 genomes] |
| rs11882363 | 1.00[AMR][1000 genomes] |
| rs28673032 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35805511 | 1.00[AMR][1000 genomes] |
| rs55715307 | 1.00[AMR][1000 genomes] |
| rs56110409 | 1.00[AMR][1000 genomes] |
| rs57795340 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59673015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60760924 | 1.00[AMR][1000 genomes] |
| rs61201100 | 1.00[AMR][1000 genomes] |
| rs73930737 | 1.00[AMR][1000 genomes] |
| rs73930738 | 1.00[AMR][1000 genomes] |
| rs73930740 | 1.00[AMR][1000 genomes] |
| rs73930742 | 1.00[AMR][1000 genomes] |
| rs73930743 | 1.00[AMR][1000 genomes] |
| rs73930744 | 1.00[AMR][1000 genomes] |
| rs73930746 | 1.00[AMR][1000 genomes] |
| rs73930752 | 1.00[AMR][1000 genomes] |
| rs73930764 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73930765 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | esv2760473 | chr18:25386088-25571466 | Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv909478 | chr18:25392569-25478085 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv909479 | chr18:25398940-25502001 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1055332 | chr18:25426081-25459328 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25428600-25433600 | Weak transcription | Dnd41 | blood |
