Variant report

Variant	rs61201100
Chromosome Location	chr19:40044318-40044319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10409266	1.00[AMR][1000 genomes]
rs10410433	1.00[AMR][1000 genomes]
rs10415824	1.00[AMR][1000 genomes]
rs10416483	1.00[AMR][1000 genomes]
rs10416833	1.00[AMR][1000 genomes]
rs10418621	1.00[AMR][1000 genomes]
rs11878949	1.00[AMR][1000 genomes]
rs11881743	1.00[AMR][1000 genomes]
rs11881791	1.00[AMR][1000 genomes]
rs11882363	1.00[AMR][1000 genomes]
rs13345090	1.00[AMR][1000 genomes]
rs28673032	1.00[AMR][1000 genomes]
rs35805511	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35904695	1.00[AMR][1000 genomes]
rs55715307	1.00[AMR][1000 genomes]
rs56110409	1.00[AMR][1000 genomes]
rs57795340	1.00[AMR][1000 genomes]
rs59673015	1.00[AMR][1000 genomes]
rs60760924	1.00[AMR][1000 genomes]
rs73930737	1.00[AMR][1000 genomes]
rs73930738	1.00[AMR][1000 genomes]
rs73930740	1.00[AMR][1000 genomes]
rs73930742	1.00[AMR][1000 genomes]
rs73930743	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930744	1.00[AMR][1000 genomes]
rs73930746	1.00[AMR][1000 genomes]
rs73930752	1.00[AMR][1000 genomes]
rs73930764	1.00[AMR][1000 genomes]
rs73930765	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv911692	chr19:39979966-40046863	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40031200-40049600	Weak transcription	Right Atrium	heart
2	chr19:40038600-40048000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr19:40041200-40048200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:40042200-40047200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr19:40042800-40044400	Enhancers	GM12878-XiMat	blood
6	chr19:40043000-40045600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr19:40043000-40048200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr19:40043200-40048000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr19:40043600-40048200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr19:40044000-40048200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr19:40044200-40046400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr19:40044200-40048400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:40044200-40049600	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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