Variant report
| Variant | rs60760924 |
|---|---|
| Chromosome Location | chr19:40059804-40059805 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:39897739..39899280-chr19:40059188..40061232,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000128016 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10409266 | 1.00[AMR][1000 genomes] |
| rs10410433 | 1.00[AMR][1000 genomes] |
| rs10415824 | 1.00[AMR][1000 genomes] |
| rs10416483 | 1.00[AMR][1000 genomes] |
| rs10416833 | 1.00[AMR][1000 genomes] |
| rs10418621 | 1.00[AMR][1000 genomes] |
| rs11878949 | 1.00[AMR][1000 genomes] |
| rs11881743 | 1.00[AMR][1000 genomes] |
| rs11881791 | 1.00[AMR][1000 genomes] |
| rs11882363 | 1.00[AMR][1000 genomes] |
| rs13345090 | 1.00[AMR][1000 genomes] |
| rs28673032 | 1.00[AMR][1000 genomes] |
| rs35805511 | 1.00[AMR][1000 genomes] |
| rs35904695 | 1.00[AMR][1000 genomes] |
| rs55715307 | 1.00[AMR][1000 genomes] |
| rs56110409 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57795340 | 1.00[AMR][1000 genomes] |
| rs59673015 | 1.00[AMR][1000 genomes] |
| rs61201100 | 1.00[AMR][1000 genomes] |
| rs73930737 | 1.00[AMR][1000 genomes] |
| rs73930738 | 1.00[AMR][1000 genomes] |
| rs73930740 | 1.00[AMR][1000 genomes] |
| rs73930742 | 1.00[AMR][1000 genomes] |
| rs73930743 | 1.00[AMR][1000 genomes] |
| rs73930744 | 1.00[AMR][1000 genomes] |
| rs73930746 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73930752 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73930764 | 1.00[AMR][1000 genomes] |
| rs73930765 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060251 | chr19:39982988-40099773 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv579509 | chr19:40004640-40133438 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 3 | esv34120 | chr19:40044635-40131820 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:40057600-40060200 | Enhancers | Placenta | Placenta |
