Variant report

Variant	rs13354280
Chromosome Location	chr5:16105923-16105924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10051368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051545	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059842	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059919	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10475073	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446032	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446036	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1561637	1.00[ASN][1000 genomes]
rs2121182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3933641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726990	1.00[ASN][1000 genomes]
rs9312903	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312906	1.00[ASN][1000 genomes]
rs9312907	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16104200-16108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16104600-16107200	Enhancers	Fetal Heart	heart
3	chr5:16105000-16106200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:16105000-16106800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:16105800-16106000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:16105800-16108800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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