Variant report

Variant rs13357926
Chromosome Location chr5:115885190-115885191
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115871000-115890400 Weak transcription Pancreas Pancrea
2 chr5:115873200-115889800 Weak transcription Rectal Smooth Muscle rectum
3 chr5:115876400-115886200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr5:115878200-115893200 Enhancers Fetal Adrenal Gland Adrenal Gland
5 chr5:115880000-115890400 Weak transcription Colonic Mucosa Colon
6 chr5:115880800-115900600 Weak transcription Fetal Kidney kidney
7 chr5:115881000-115886200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr5:115881000-115888200 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr5:115881000-115889000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr5:115881600-115886200 Weak transcription Placenta Placenta
11 chr5:115881600-115888400 Enhancers Fetal Intestine Large intestine
12 chr5:115881800-115889000 Enhancers Brain Hippocampus Middle brain
13 chr5:115882000-115885200 Enhancers Brain Substantia Nigra brain
14 chr5:115882000-115885200 Enhancers Fetal Intestine Small intestine
15 chr5:115882200-115886400 Genic enhancers HUES6 Cell Line embryonic stem cell
16 chr5:115882200-115890200 Weak transcription Fetal Stomach stomach
17 chr5:115882400-115885400 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr5:115882400-115886600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr5:115882400-115888600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr5:115882600-115885400 Strong transcription HUES64 Cell Line embryonic stem cell
21 chr5:115882600-115885400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr5:115882600-115885800 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr5:115882600-115886200 Weak transcription Psoas Muscle Psoas
24 chr5:115882600-115888200 Weak transcription Fetal Muscle Leg muscle
25 chr5:115882600-115890400 Weak transcription HepG2 liver
26 chr5:115882600-115890800 Weak transcription Aorta Aorta
27 chr5:115882600-115895400 Weak transcription Fetal Muscle Trunk muscle
28 chr5:115882800-115887200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr5:115883000-115887400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr5:115883600-115885400 Enhancers Brain Inferior Temporal Lobe brain
31 chr5:115883800-115885200 Strong transcription iPS-20b Cell Line embryonic stem cell
32 chr5:115883800-115890400 Weak transcription Gastric stomach
33 chr5:115884000-115885400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr5:115884000-115886600 Weak transcription Duodenum Mucosa Duodenum
35 chr5:115884000-115886600 Weak transcription Small Intestine intestine
36 chr5:115884000-115889000 Weak transcription Left Ventricle heart
37 chr5:115884000-115890000 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr5:115884200-115885400 Genic enhancers ES-I3 Cell Line embryonic stem cell
39 chr5:115884200-115885400 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr5:115884200-115886200 Weak transcription H1 Cell Line embryonic stem cell
41 chr5:115884200-115886200 Weak transcription H9 Cell Line embryonic stem cell
42 chr5:115884200-115886600 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr5:115884200-115888600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr5:115884200-115889000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr5:115884400-115889200 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr5:115884600-115886200 Weak transcription Brain Angular Gyrus brain
47 chr5:115884800-115893200 Enhancers Brain Cingulate Gyrus brain
48 chr5:115885000-115885600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr5:115885000-115887200 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr5:115885000-115888000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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