Variant report

Variant rs57776560
Chromosome Location chr5:115905457-115905458
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115890600-115907800 Weak transcription Spleen Spleen
2 chr5:115890800-115907600 Weak transcription Colonic Mucosa Colon
3 chr5:115891000-115907600 Weak transcription Ovary ovary
4 chr5:115896000-115907600 Weak transcription Fetal Muscle Trunk muscle
5 chr5:115896600-115905800 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr5:115897200-115909800 Transcr. at gene 5' and 3' HUES6 Cell Line embryonic stem cell
7 chr5:115898400-115907400 Enhancers Fetal Adrenal Gland Adrenal Gland
8 chr5:115900200-115907400 Weak transcription Colon Smooth Muscle Colon
9 chr5:115900600-115907000 Weak transcription Stomach Smooth Muscle stomach
10 chr5:115901000-115908000 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
11 chr5:115901200-115907600 Weak transcription Pancreas Pancrea
12 chr5:115901800-115906600 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
13 chr5:115902000-115906800 Weak transcription Rectal Smooth Muscle rectum
14 chr5:115902400-115906000 Enhancers HepG2 liver
15 chr5:115903000-115905600 Transcr. at gene 5' and 3' ES-I3 Cell Line embryonic stem cell
16 chr5:115903000-115906600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr5:115903400-115906000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr5:115903600-115905800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr5:115903600-115906200 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr5:115903600-115907400 Enhancers Brain Hippocampus Middle brain
21 chr5:115903600-115907600 Weak transcription Left Ventricle heart
22 chr5:115904000-115905800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
23 chr5:115904000-115906800 Enhancers Brain Cingulate Gyrus brain
24 chr5:115904200-115906200 Enhancers Fetal Brain Male brain
25 chr5:115904200-115907600 Enhancers Brain Anterior Caudate brain
26 chr5:115904400-115905800 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr5:115904400-115906200 Enhancers Brain Substantia Nigra brain
28 chr5:115904400-115906200 Enhancers Fetal Brain Female brain
29 chr5:115904400-115906600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
30 chr5:115904400-115906600 Enhancers Fetal Intestine Small intestine
31 chr5:115904400-115907400 Enhancers Brain Inferior Temporal Lobe brain
32 chr5:115904600-115905800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr5:115904600-115906000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr5:115904600-115906000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
35 chr5:115904600-115907000 Weak transcription Fetal Lung lung
36 chr5:115904800-115906000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr5:115904800-115906600 Enhancers Duodenum Mucosa Duodenum
38 chr5:115904800-115906600 Enhancers Fetal Intestine Large intestine
39 chr5:115904800-115907200 Enhancers Cortex derived primary cultured neurospheres brain
40 chr5:115904800-115907200 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr5:115905000-115905600 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
42 chr5:115905000-115906200 Weak transcription Fetal Kidney kidney
43 chr5:115905000-115906800 Enhancers Rectal Mucosa Donor 31 rectum
44 chr5:115905000-115907400 Enhancers Brain Angular Gyrus brain
45 chr5:115905200-115906000 Weak transcription Psoas Muscle Psoas
46 chr5:115905200-115906400 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
47 chr5:115905200-115906400 Enhancers Fetal Muscle Leg muscle
48 chr5:115905200-115907000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr5:115905200-115907400 Weak transcription Fetal Stomach stomach
50 chr5:115905400-115905600 Flanking Active TSS H9 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links