Variant report

Variant	rs13357666
Chromosome Location	chr5:115904296-115904297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:115904129..115907739-chr5:115909265..115911366,3	MCF-7	breast:
2	chr5:115903078..115905605-chr5:115909022..115912009,2	MCF-7	breast:
3	chr5:115901171..115904653-chr5:115905070..115909680,4	K562	blood:

Variant related genes	Relation type
ENSG00000249167	Chromatin interaction
ENSG00000092421	Chromatin interaction

rs_ID	r²[population]
rs13355562	0.89[AFR][1000 genomes]
rs13357926	0.89[AFR][1000 genomes]
rs13362128	0.89[AFR][1000 genomes]
rs34096390	1.00[EUR][1000 genomes]
rs57776560	1.00[AFR][1000 genomes]
rs73781091	1.00[EUR][1000 genomes]

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
2	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
3	chr5:115891000-115907600	Weak transcription	Ovary	ovary
4	chr5:115891200-115904600	Weak transcription	Fetal Stomach	stomach
5	chr5:115891400-115905200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:115896000-115904800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:115896000-115905000	Weak transcription	Psoas Muscle	Psoas
8	chr5:115896000-115905200	Weak transcription	Lung	lung
9	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:115896600-115905800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:115897200-115909800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
12	chr5:115898400-115907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:115898600-115905200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:115898800-115904400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:115900200-115907400	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:115900600-115907000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:115901000-115908000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
18	chr5:115901200-115907600	Weak transcription	Pancreas	Pancrea
19	chr5:115901800-115906600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
20	chr5:115902000-115905200	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:115902000-115906800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:115902200-115904400	Weak transcription	Fetal Brain Female	brain
23	chr5:115902400-115904400	Weak transcription	Fetal Lung	lung
24	chr5:115902400-115906000	Enhancers	HepG2	liver
25	chr5:115902600-115904400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:115902600-115904400	Weak transcription	Brain Substantia Nigra	brain
27	chr5:115902600-115904800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:115902800-115904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:115902800-115904400	Weak transcription	Fetal Kidney	kidney
30	chr5:115902800-115904600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:115902800-115905200	Weak transcription	Placenta	Placenta
32	chr5:115903000-115905000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
33	chr5:115903000-115905400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:115903000-115905600	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
35	chr5:115903000-115906600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:115903200-115904600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:115903200-115905000	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
38	chr5:115903400-115904400	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
39	chr5:115903400-115904400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr5:115903400-115904400	Weak transcription	Fetal Intestine Small	intestine
41	chr5:115903400-115906000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr5:115903600-115904800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:115903600-115905000	Weak transcription	Brain Angular Gyrus	brain
44	chr5:115903600-115905800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:115903600-115906200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr5:115903600-115907400	Enhancers	Brain Hippocampus Middle	brain
47	chr5:115903600-115907600	Weak transcription	Left Ventricle	heart
48	chr5:115904000-115904800	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr5:115904000-115905800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:115904000-115906800	Enhancers	Brain Cingulate Gyrus	brain

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