Variant report

Variant	rs1336930
Chromosome Location	chr13:54201175-54201176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1336925	0.86[ASN][1000 genomes]
rs1932868	0.88[ASN][1000 genomes]
rs1999800	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2065903	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2785825	0.82[ASN][1000 genomes]
rs2785827	0.87[ASN][1000 genomes]
rs2785828	0.88[ASN][1000 genomes]
rs2785829	0.88[ASN][1000 genomes]
rs2806723	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2806726	0.88[ASN][1000 genomes]
rs2806728	0.88[ASN][1000 genomes]
rs2806730	0.88[ASN][1000 genomes]
rs4884592	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7323659	0.88[ASN][1000 genomes]
rs7327272	0.87[ASN][1000 genomes]
rs7327291	0.87[ASN][1000 genomes]
rs7328571	0.87[ASN][1000 genomes]
rs949944	0.85[ASN][1000 genomes]
rs9536485	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9568889	0.88[ASN][1000 genomes]
rs9591526	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv527779	chr13:54125624-54249153	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900091	chr13:54182173-54272104	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv455890	chr13:54184237-54215094	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv561679	chr13:54184237-54215094	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54201000-54201400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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