Variant report

Variant	rs1336925
Chromosome Location	chr13:54280152-54280153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1336930	0.86[ASN][1000 genomes]
rs17088933	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs17088940	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1932868	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999800	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2065903	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2785824	0.97[EUR][1000 genomes]
rs2785825	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2785827	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785828	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2785829	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806723	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2806726	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806728	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806730	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4884592	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7323659	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7327272	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7327291	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7328571	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9316662	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs949944	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9536485	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9563181	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9568889	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568921	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568922	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9568925	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9568934	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9591526	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3368231	chr13:54269000-54286267	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54266000-54287200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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