Variant report

Variant	rs9568925
Chromosome Location	chr13:54362624-54362625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1336925	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17088933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17088940	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932868	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2785824	0.88[EUR][1000 genomes]
rs2785825	0.87[EUR][1000 genomes]
rs2785827	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2785828	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2785829	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806723	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806726	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806728	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806730	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4884592	0.80[EUR][1000 genomes]
rs7323659	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7327272	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7327291	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7328571	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9316662	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949944	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9563181	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568889	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568921	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568922	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9568947	0.80[EUR][1000 genomes]
rs9591526	0.80[EUR][1000 genomes]
rs9634689	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34743	chr13:54313729-54424593	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757532	chr13:54333209-54421334	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759937	chr13:54333209-54421334	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv427931	chr13:54352943-54543848	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv826646	chr13:54355102-54423461	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900092	chr13:54362624-54419426	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54361400-54363000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr13:54361400-54363400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:54361400-54363400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:54361600-54363200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:54361600-54363200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:54362000-54363400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:54362200-54363000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:54362200-54363000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr13:54362200-54363000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:54362200-54363000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:54362200-54363400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:54362400-54363000	Enhancers	H1 Cell Line	embryonic stem cell

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