Variant report
| Variant | rs9536485 |
|---|---|
| Chromosome Location | chr13:54195921-54195922 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1336925 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1336930 | 0.80[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17088933 | 0.90[CEU][hapmap];1.00[JPT][hapmap] |
| rs1932868 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1999800 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2065903 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2785825 | 0.88[ASN][1000 genomes] |
| rs2785827 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2785828 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2785829 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2806723 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2806726 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2806728 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2806730 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4884592 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7323659 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7327272 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7327291 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7328571 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs949944 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9568889 | 0.94[ASN][1000 genomes] |
| rs9568934 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
| rs9591526 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044137 | chr13:54124103-54521120 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv541777 | chr13:54124103-54521120 | Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv527779 | chr13:54125624-54249153 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv900091 | chr13:54182173-54272104 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv455890 | chr13:54184237-54215094 | Active TSS Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv561679 | chr13:54184237-54215094 | Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:54195800-54196600 | Enhancers | NH-A | brain |
| 2 | chr13:54195800-54198200 | Enhancers | Fetal Brain Male | brain |
