Variant report

Variant	rs1337022
Chromosome Location	chr9:73578526-73578527
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10780983	0.92[ASN][1000 genomes]
rs10780984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868929	0.87[ASN][1000 genomes]
rs10868931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142648	0.87[ASN][1000 genomes]
rs11142651	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11142658	0.89[ASN][1000 genomes]
rs11791907	0.84[ASN][1000 genomes]
rs1337023	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1415219	0.84[ASN][1000 genomes]
rs1981160	0.87[ASN][1000 genomes]
rs1981162	0.87[ASN][1000 genomes]
rs2993005	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7865659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73571000-73579800	Weak transcription	Osteobl	bone
2	chr9:73574600-73579600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:73574800-73578800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:73575200-73580000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:73578000-73578600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:73578000-73579400	Enhancers	Liver	Liver
7	chr9:73578200-73578600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr9:73578200-73579200	Weak transcription	HSMMtube	muscle
9	chr9:73578200-73580200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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