Variant report

Variant	rs10780983
Chromosome Location	chr9:73567504-73567505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10780984	0.90[ASN][1000 genomes]
rs10868929	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10868930	0.89[AMR][1000 genomes]
rs10868931	0.92[ASN][1000 genomes]
rs11142648	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11142658	0.92[ASN][1000 genomes]
rs11791907	0.89[ASN][1000 genomes]
rs1337022	0.92[ASN][1000 genomes]
rs1337023	0.90[ASN][1000 genomes]
rs1415219	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1981160	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1981161	0.80[AMR][1000 genomes]
rs1981162	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2993005	0.96[ASN][1000 genomes]
rs73465065	0.86[AMR][1000 genomes]
rs7849064	0.86[AMR][1000 genomes]
rs7865659	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73562800-73568200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:73563000-73569000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:73563600-73567800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:73563600-73568600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:73563800-73568600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:73563800-73568600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:73563800-73568600	Weak transcription	HMEC	breast
8	chr9:73563800-73568600	Weak transcription	NHEK	skin
9	chr9:73564000-73569200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:73565800-73568200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:73565800-73568400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:73566200-73567600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:73566600-73568600	Enhancers	Osteobl	bone
14	chr9:73566600-73568800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:73566600-73570800	Enhancers	NHDF-Ad	bronchial
16	chr9:73566800-73567600	Weak transcription	NH-A	brain
17	chr9:73566800-73568000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:73566800-73570400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:73567000-73567600	Enhancers	Fetal Heart	heart
20	chr9:73567000-73568000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:73567000-73571000	Enhancers	HSMM	muscle
22	chr9:73567000-73571000	Enhancers	HSMMtube	muscle
23	chr9:73567200-73568600	Weak transcription	Aorta	Aorta
24	chr9:73567200-73570000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:73567200-73571200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:73567400-73567600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:73567400-73568400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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