Variant report

Variant	rs10868930
Chromosome Location	chr9:73555662-73555663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10780983	0.89[AMR][1000 genomes]
rs10868929	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11142648	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1337017	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1415219	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1890019	1.00[ASN][1000 genomes]
rs1981161	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2992995	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2993022	1.00[ASN][1000 genomes]
rs3010419	0.80[ASN][1000 genomes]
rs73465065	0.80[AMR][1000 genomes]
rs7849064	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73551600-73556000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:73551800-73562200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:73554200-73556400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:73554800-73556400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:73554800-73556400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:73554800-73556600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:73555000-73556400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:73555000-73556400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr9:73555000-73557800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:73555200-73556200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:73555200-73556400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:73555400-73556400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:73555600-73556200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:73555600-73556400	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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