Variant report

Variant	rs3010419
Chromosome Location	chr9:73536416-73536417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr9:73536124-73536495	MCF10A-Er-Src	breast:	n/a	chr9:73536126-73536138
2	MAFK	chr9:73536186-73536446	IMR90	lung:	n/a	chr9:73536311-73536322
3	MAFK	chr9:73536199-73536431	H1-hESC	embryonic stem cell:	n/a	chr9:73536311-73536322
4	BACH1	chr9:73536143-73536470	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PIGUP1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10868930	0.80[ASN][1000 genomes]
rs1337017	0.80[ASN][1000 genomes]
rs1890019	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2992995	0.81[ASN][1000 genomes]
rs2993022	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3010447	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7856482	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73529600-73539800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73530000-73539400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:73535400-73536800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:73535800-73536600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:73535800-73536600	Enhancers	Osteobl	bone
6	chr9:73535800-73536800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:73535800-73537000	Enhancers	NHDF-Ad	bronchial
8	chr9:73535800-73539000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:73536000-73536600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:73536000-73536600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:73536000-73536600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:73536000-73536600	Enhancers	NH-A	brain
13	chr9:73536000-73536800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:73536000-73536800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:73536000-73536800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:73536000-73536800	Enhancers	NHEK	skin
17	chr9:73536000-73538000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:73536200-73536600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:73536200-73536600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:73536200-73536600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:73536200-73536600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:73536200-73536800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:73536400-73539000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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