Variant report

Variant	rs7856482
Chromosome Location	chr9:73485446-73485447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10511991	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10780982	0.95[ASN][1000 genomes]
rs10868927	0.80[ASN][1000 genomes]
rs1832263	0.80[ASN][1000 genomes]
rs2039642	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2993012	0.95[ASN][1000 genomes]
rs3010419	0.80[JPT][hapmap]
rs3010445	0.80[ASN][1000 genomes]
rs4543603	0.91[ASN][1000 genomes]
rs73459240	0.94[ASN][1000 genomes]
rs7868074	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7856482	SMC5	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73484200-73488200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73484200-73488200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:73484200-73488200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:73484200-73488400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:73484400-73487600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:73485400-73486600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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