Variant report

Variant	rs1832263
Chromosome Location	chr9:73521852-73521853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10511991	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs10780982	0.85[ASN][1000 genomes]
rs10868926	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10868927	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10868928	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11142642	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1932924	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2039642	0.80[ASN][1000 genomes]
rs2993012	0.85[ASN][1000 genomes]
rs3010419	0.80[GIH][hapmap]
rs3010445	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3010446	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4543603	0.88[ASN][1000 genomes]
rs73459240	0.86[ASN][1000 genomes]
rs7856482	0.90[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs7868074	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1832263	FXN	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73518000-73522400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:73518400-73529400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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