Variant report

Variant	rs73459240
Chromosome Location	chr9:73509020-73509021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10511991	0.95[ASN][1000 genomes]
rs10780982	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10868926	0.86[AMR][1000 genomes]
rs10868927	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10868928	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11142639	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11142642	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1337033	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1832263	0.86[ASN][1000 genomes]
rs2039642	0.94[ASN][1000 genomes]
rs2993012	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3010445	0.86[ASN][1000 genomes]
rs3010446	0.84[ASN][1000 genomes]
rs4543603	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856482	0.94[ASN][1000 genomes]
rs7868074	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv818705	chr9:73500857-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3483093	chr9:73500939-73514808	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3483094	chr9:73500939-73514808	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3693031	chr9:73502424-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv818706	chr9:73502424-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv516833	chr9:73502424-73514958	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73508600-73519800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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