Variant report

Variant	rs1337033
Chromosome Location	chr9:73507057-73507058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10511991	0.88[CHB][hapmap]
rs10780982	0.88[AMR][1000 genomes]
rs10868926	0.81[AMR][1000 genomes]
rs11142639	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2993012	0.89[AMR][1000 genomes]
rs2993013	0.92[ASN][1000 genomes]
rs3010419	0.82[CHD][hapmap];0.93[JPT][hapmap]
rs3010447	0.85[ASN][1000 genomes]
rs4543603	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73459240	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7856482	0.83[CHB][hapmap]
rs7868074	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv818705	chr9:73500857-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3483093	chr9:73500939-73514808	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3483094	chr9:73500939-73514808	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv442152	chr9:73502255-73507221	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3693031	chr9:73502424-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv818706	chr9:73502424-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv516833	chr9:73502424-73514958	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1337033	C9orf57	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73506800-73508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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