Variant report

Variant	rs10868926
Chromosome Location	chr9:73515771-73515772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10780982	0.80[AMR][1000 genomes]
rs10868927	0.88[ASN][1000 genomes]
rs10868928	0.87[ASN][1000 genomes]
rs11142639	0.80[AMR][1000 genomes]
rs11142642	0.86[ASN][1000 genomes]
rs1337033	0.81[AMR][1000 genomes]
rs1832263	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2993012	0.81[AMR][1000 genomes]
rs3010445	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3010446	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4543603	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73459240	0.86[AMR][1000 genomes]
rs7856482	0.81[CHB][hapmap]
rs7868074	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10868926	FXN	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73508600-73519800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:73515600-73516200	Enhancers	Duodenum Mucosa	Duodenum
3	chr9:73515600-73516200	Enhancers	Stomach Mucosa	stomach
4	chr9:73515600-73516800	Enhancers	HMEC	breast
5	chr9:73515600-73516800	Enhancers	NHEK	skin
6	chr9:73515600-73517000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:73515600-73517000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:73515600-73517000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:73515600-73517600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:73515600-73517800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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