Variant report

Variant	rs10868928
Chromosome Location	chr9:73525515-73525516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10511991	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs10780982	0.84[ASN][1000 genomes]
rs10868926	0.87[ASN][1000 genomes]
rs10868927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11142642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1832263	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1932924	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2993012	0.84[ASN][1000 genomes]
rs3010445	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3010446	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4543603	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73459240	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7856482	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs7868074	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10868928	FXN	cis	parietal	SCAN
rs10868928	C9orf57	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73518400-73529400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73525000-73525800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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