Variant report

Variant	rs1337017
Chromosome Location	chr9:73553169-73553170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10868929	0.81[AMR][1000 genomes]
rs10868930	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142648	0.81[AMR][1000 genomes]
rs1415219	0.81[AMR][1000 genomes]
rs1890019	1.00[ASN][1000 genomes]
rs1981160	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1981161	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1981162	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2992995	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2993022	1.00[ASN][1000 genomes]
rs3010419	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7856482	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73547400-73555200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:73547600-73554200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:73547800-73555400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:73551600-73556000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:73551800-73554800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:73551800-73554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:73551800-73562200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:73552000-73554200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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