Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73542298..73544919-chr9:73545647..73547854,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10780983	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10780984	0.82[ASN][1000 genomes]
rs10868929	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868930	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10868931	0.84[ASN][1000 genomes]
rs11142648	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142658	0.84[ASN][1000 genomes]
rs11791907	0.81[ASN][1000 genomes]
rs1337017	0.81[AMR][1000 genomes]
rs1337022	0.84[ASN][1000 genomes]
rs1337023	0.82[ASN][1000 genomes]
rs1981160	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1981161	0.82[AMR][1000 genomes]
rs1981162	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2992995	0.81[AMR][1000 genomes]
rs2993005	0.87[ASN][1000 genomes]
rs3010419	0.86[JPT][hapmap]
rs73465065	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7849064	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7856482	0.81[JPT][hapmap]
rs7865659	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73540400-73548200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:73540400-73550800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:73546200-73551600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:73546600-73547600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:73546600-73549600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:73546800-73547200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr9:73546800-73547600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:73546800-73547600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:73546800-73547600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:73546800-73547600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:73546800-73547600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr9:73546800-73547800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:73546800-73548200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:73547000-73547400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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