Variant report

Variant	rs7849064
Chromosome Location	chr9:73538154-73538155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10780983	0.86[AMR][1000 genomes]
rs10868929	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10868930	0.80[AMR][1000 genomes]
rs11142648	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1415219	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1981160	0.81[ASN][1000 genomes]
rs1981162	0.81[ASN][1000 genomes]
rs3010419	0.86[JPT][hapmap]
rs73465065	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856482	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7849064	ISG20	trans	brain	seeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73529600-73539800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73530000-73539400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:73535800-73539000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:73536400-73539000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:73536600-73538200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:73536600-73538400	Weak transcription	NH-A	brain
7	chr9:73536600-73539000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:73536600-73539000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:73536600-73539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:73536600-73539800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:73536600-73541600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:73536800-73539000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:73536800-73539400	Weak transcription	NHEK	skin
14	chr9:73536800-73539800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:73536800-73539800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:73537400-73539000	Enhancers	NHDF-Ad	bronchial
17	chr9:73537800-73539000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:73538000-73539000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:73538000-73539000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:73538000-73539000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links