Variant report

Variant	rs13375469
Chromosome Location	chr1:69431362-69431363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10047054	0.93[ASN][1000 genomes]
rs1022013	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11209370	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11582908	0.87[ASN][1000 genomes]
rs11801267	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11801354	0.87[ASN][1000 genomes]
rs11801756	0.87[ASN][1000 genomes]
rs11802814	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11804299	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11806894	0.87[ASN][1000 genomes]
rs11809118	0.87[ASN][1000 genomes]
rs12087596	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13375505	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1396022	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1507855	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1507858	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2420551	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28599531	0.87[ASN][1000 genomes]
rs4301671	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4313445	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4328112	0.93[ASN][1000 genomes]
rs4390220	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4420133	0.93[ASN][1000 genomes]
rs4484966	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4484967	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4539178	0.93[ASN][1000 genomes]
rs4649904	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56026859	0.93[ASN][1000 genomes]
rs58102432	0.87[ASN][1000 genomes]
rs58815715	0.93[ASN][1000 genomes]
rs6658033	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6658121	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6658623	0.93[ASN][1000 genomes]
rs6662460	0.93[ASN][1000 genomes]
rs6662550	0.93[ASN][1000 genomes]
rs6662842	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6669357	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6673849	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6682095	0.93[ASN][1000 genomes]
rs6682255	0.93[ASN][1000 genomes]
rs72680475	0.87[ASN][1000 genomes]
rs72680481	0.87[ASN][1000 genomes]
rs72680485	0.87[ASN][1000 genomes]
rs72680492	0.93[ASN][1000 genomes]
rs72680493	0.93[ASN][1000 genomes]
rs72680496	0.93[ASN][1000 genomes]
rs72682206	0.93[ASN][1000 genomes]
rs72682210	0.93[ASN][1000 genomes]
rs72682218	0.93[ASN][1000 genomes]
rs72682222	0.93[ASN][1000 genomes]
rs72682227	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72682228	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7547769	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7551318	0.87[ASN][1000 genomes]
rs9436417	0.87[ASN][1000 genomes]
rs9436422	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9436423	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9436863	0.93[ASN][1000 genomes]
rs9436866	0.93[ASN][1000 genomes]
rs9803974	0.93[ASN][1000 genomes]
rs9804111	0.93[ASN][1000 genomes]
rs994176	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69426400-69440400	Weak transcription	Fetal Brain Female	brain
2	chr1:69427200-69435200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:69427400-69432000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:69427400-69435200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:69427800-69432000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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