Variant report

Variant	rs2420551
Chromosome Location	chr1:69438777-69438778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10047054	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1022013	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11209370	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11582908	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11801267	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11801354	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11801756	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11802814	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11804299	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11806894	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11809118	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12087596	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13375469	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13375505	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1396022	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1507855	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1507858	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28599531	0.80[ASN][1000 genomes]
rs4301671	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4313445	1.00[ASN][1000 genomes]
rs4328112	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4390220	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4420133	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4484966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4484967	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539178	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4649904	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56026859	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58102432	0.80[ASN][1000 genomes]
rs58815715	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6658033	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6658121	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6658623	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6662460	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6662550	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6662842	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6669357	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673849	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6682095	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6682255	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72680475	0.80[ASN][1000 genomes]
rs72680481	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72680485	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72680492	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72680493	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72680496	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72682206	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72682210	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72682218	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72682222	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72682227	0.91[EUR][1000 genomes]
rs72682228	0.91[EUR][1000 genomes]
rs7547769	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7551318	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9436417	0.80[ASN][1000 genomes]
rs9436422	0.86[ASN][1000 genomes]
rs9436423	0.86[ASN][1000 genomes]
rs9436863	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9436866	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9803974	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9804111	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs994176	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69426400-69440400	Weak transcription	Fetal Brain Female	brain
2	chr1:69435600-69441400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:69435800-69439200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:69435800-69440000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:69435800-69440000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:69435800-69441400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:69435800-69442600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:69436200-69440800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:69436200-69441000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:69436200-69441200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:69436400-69441000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:69436600-69440800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:69436600-69441200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:69436600-69441200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:69437400-69439600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:69438200-69444000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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