Variant report

Variant	rs994176
Chromosome Location	chr1:69430915-69430916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10047054	1.00[ASN][1000 genomes]
rs1022013	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10493451	0.82[ASN][1000 genomes]
rs11209362	0.82[ASN][1000 genomes]
rs11209370	1.00[ASN][1000 genomes]
rs11576549	0.82[ASN][1000 genomes]
rs11579356	0.82[ASN][1000 genomes]
rs11581649	0.82[ASN][1000 genomes]
rs11582908	0.93[ASN][1000 genomes]
rs11801267	1.00[ASN][1000 genomes]
rs11801354	0.93[ASN][1000 genomes]
rs11801756	0.93[ASN][1000 genomes]
rs11802814	1.00[ASN][1000 genomes]
rs11804299	1.00[ASN][1000 genomes]
rs11806894	0.93[ASN][1000 genomes]
rs11809118	0.93[ASN][1000 genomes]
rs12087596	1.00[ASN][1000 genomes]
rs13375469	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13375505	1.00[ASN][1000 genomes]
rs1396022	1.00[ASN][1000 genomes]
rs1507855	1.00[ASN][1000 genomes]
rs1507858	1.00[ASN][1000 genomes]
rs2420551	0.86[ASN][1000 genomes]
rs28599531	0.93[ASN][1000 genomes]
rs4301671	1.00[ASN][1000 genomes]
rs4313445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4328112	1.00[ASN][1000 genomes]
rs4390220	1.00[ASN][1000 genomes]
rs4420133	1.00[ASN][1000 genomes]
rs4484966	1.00[ASN][1000 genomes]
rs4484967	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4539178	1.00[ASN][1000 genomes]
rs4649904	1.00[ASN][1000 genomes]
rs55815583	0.82[ASN][1000 genomes]
rs56026859	1.00[ASN][1000 genomes]
rs58102432	0.93[ASN][1000 genomes]
rs58815715	1.00[ASN][1000 genomes]
rs6658033	1.00[ASN][1000 genomes]
rs6658121	1.00[ASN][1000 genomes]
rs6658623	1.00[ASN][1000 genomes]
rs6662460	1.00[ASN][1000 genomes]
rs6662550	1.00[ASN][1000 genomes]
rs6662842	1.00[ASN][1000 genomes]
rs6669357	0.86[ASN][1000 genomes]
rs6673849	1.00[ASN][1000 genomes]
rs6682095	1.00[ASN][1000 genomes]
rs6682255	1.00[ASN][1000 genomes]
rs72680475	0.93[ASN][1000 genomes]
rs72680481	0.93[ASN][1000 genomes]
rs72680485	0.93[ASN][1000 genomes]
rs72680492	1.00[ASN][1000 genomes]
rs72680493	1.00[ASN][1000 genomes]
rs72680496	1.00[ASN][1000 genomes]
rs72682206	1.00[ASN][1000 genomes]
rs72682210	1.00[ASN][1000 genomes]
rs72682218	1.00[ASN][1000 genomes]
rs72682221	0.80[AMR][1000 genomes]
rs72682222	1.00[ASN][1000 genomes]
rs72682227	0.93[ASN][1000 genomes]
rs72682228	0.93[ASN][1000 genomes]
rs7412448	0.82[ASN][1000 genomes]
rs7414744	0.82[ASN][1000 genomes]
rs7547769	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7551318	0.93[ASN][1000 genomes]
rs9436417	0.93[ASN][1000 genomes]
rs9436422	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436863	1.00[ASN][1000 genomes]
rs9436866	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9803974	1.00[ASN][1000 genomes]
rs9804111	1.00[ASN][1000 genomes]
rs9988609	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69426400-69440400	Weak transcription	Fetal Brain Female	brain
2	chr1:69427200-69435200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:69427400-69432000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:69427400-69435200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:69427800-69432000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:69430800-69431200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links