Variant report

Variant	rs55815583
Chromosome Location	chr1:69348956-69348957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10047054	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1022013	0.84[EUR][1000 genomes]
rs10493451	1.00[ASN][1000 genomes]
rs11209362	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11209370	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11576549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11579356	1.00[ASN][1000 genomes]
rs11581649	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582908	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11801267	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11801354	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11801756	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11802814	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11804299	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11806894	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11809118	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12087596	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13375505	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1396022	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1507855	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1507858	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28599531	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4301671	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4328112	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4390220	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4420133	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4484966	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4484967	0.83[EUR][1000 genomes]
rs4539178	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4649904	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56026859	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58102432	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58815715	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6658033	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6658121	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6658623	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6662460	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6662550	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6662842	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6669357	0.81[EUR][1000 genomes]
rs6673849	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6682095	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6682255	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72680475	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72680481	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72680485	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72680492	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72680493	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72680496	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72682206	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72682210	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72682218	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72682222	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72682227	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72682228	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7412448	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7414744	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7547769	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7551318	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9436417	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9436422	0.82[ASN][1000 genomes]
rs9436423	0.82[ASN][1000 genomes]
rs9436863	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9436866	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9803974	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9804111	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs994176	0.82[ASN][1000 genomes]
rs9988609	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871131	chr1:69323222-69427276	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
2	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69347400-69349000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:69348600-69349000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links