Variant report

Variant	rs7414744
Chromosome Location	chr1:69323222-69323223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10047054	0.82[ASN][1000 genomes]
rs10493451	1.00[ASN][1000 genomes]
rs11209352	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11209362	1.00[ASN][1000 genomes]
rs11209370	0.82[ASN][1000 genomes]
rs11576549	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11579356	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11581649	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11582908	0.88[ASN][1000 genomes]
rs11801267	0.82[ASN][1000 genomes]
rs11801354	0.88[ASN][1000 genomes]
rs11801756	0.88[ASN][1000 genomes]
rs11802814	0.82[ASN][1000 genomes]
rs11804299	0.82[ASN][1000 genomes]
rs11806894	0.88[ASN][1000 genomes]
rs11809118	0.88[ASN][1000 genomes]
rs12059133	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12065097	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12075697	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12082973	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12087596	0.82[ASN][1000 genomes]
rs12088265	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12090652	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13375505	0.82[ASN][1000 genomes]
rs1396022	0.82[ASN][1000 genomes]
rs1507855	0.82[ASN][1000 genomes]
rs1507858	0.82[ASN][1000 genomes]
rs28599531	0.88[ASN][1000 genomes]
rs4301671	0.82[ASN][1000 genomes]
rs4328112	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4390220	0.82[ASN][1000 genomes]
rs4420133	0.82[ASN][1000 genomes]
rs4484966	0.82[ASN][1000 genomes]
rs4539178	0.82[ASN][1000 genomes]
rs4649904	0.82[ASN][1000 genomes]
rs55815583	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56026859	0.82[ASN][1000 genomes]
rs58102432	0.88[ASN][1000 genomes]
rs58815715	0.82[ASN][1000 genomes]
rs6658033	0.82[ASN][1000 genomes]
rs6658121	0.82[ASN][1000 genomes]
rs6658623	0.82[ASN][1000 genomes]
rs6662460	0.82[ASN][1000 genomes]
rs6662550	0.82[ASN][1000 genomes]
rs6662842	0.82[ASN][1000 genomes]
rs6673849	0.82[ASN][1000 genomes]
rs6682095	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6682255	0.82[ASN][1000 genomes]
rs699229	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72680408	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72680475	0.88[ASN][1000 genomes]
rs72680481	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72680485	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72680492	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72680493	0.82[ASN][1000 genomes]
rs72680496	0.82[ASN][1000 genomes]
rs72682206	0.82[ASN][1000 genomes]
rs72682210	0.82[ASN][1000 genomes]
rs72682218	0.82[ASN][1000 genomes]
rs72682222	0.82[ASN][1000 genomes]
rs7412448	1.00[ASN][1000 genomes]
rs7547769	0.82[ASN][1000 genomes]
rs7551318	0.88[ASN][1000 genomes]
rs854260	0.82[AMR][1000 genomes]
rs854270	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854271	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9436417	0.88[ASN][1000 genomes]
rs9436422	0.82[ASN][1000 genomes]
rs9436423	0.82[ASN][1000 genomes]
rs9436863	0.82[ASN][1000 genomes]
rs9436866	0.82[ASN][1000 genomes]
rs9803974	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9804111	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9887767	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9887801	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs994176	0.82[ASN][1000 genomes]
rs9988609	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527722	chr1:69212053-69323222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv871131	chr1:69323222-69427276	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69322000-69323600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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