Variant report

Variant	rs11209352
Chromosome Location	chr1:69265731-69265732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11579356	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11801277	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059133	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12065097	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12075697	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12082973	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088265	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090652	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1492057	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1826355	0.96[ASN][1000 genomes]
rs2420178	0.96[ASN][1000 genomes]
rs6656449	0.95[AFR][1000 genomes]
rs6680906	0.85[AFR][1000 genomes]
rs699229	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680408	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7414744	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854260	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854270	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854271	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854286	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854287	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9887767	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9887801	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9988609	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527722	chr1:69212053-69323222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69261800-69267800	Enhancers	Liver	Liver
2	chr1:69262600-69266000	Enhancers	Adipose Nuclei	Adipose
3	chr1:69262800-69266200	Enhancers	Ovary	ovary
4	chr1:69263000-69266000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:69263800-69266200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:69264800-69265800	Enhancers	Fetal Lung	lung
7	chr1:69265200-69266000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:69265400-69266600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:69265600-69266600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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