Variant report
| Variant | rs6656449 |
|---|---|
| Chromosome Location | chr1:69276090-69276091 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10889787 | 0.90[ASN][1000 genomes] |
| rs10889788 | 0.90[ASN][1000 genomes] |
| rs10889789 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11209352 | 0.95[AFR][1000 genomes] |
| rs12065097 | 0.91[AFR][1000 genomes] |
| rs12075697 | 0.84[AFR][1000 genomes] |
| rs12082973 | 0.92[AFR][1000 genomes] |
| rs12088265 | 0.84[AFR][1000 genomes] |
| rs1388654 | 0.87[ASN][1000 genomes] |
| rs1492064 | 0.90[ASN][1000 genomes] |
| rs1844937 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4625320 | 1.00[ASN][1000 genomes] |
| rs4926377 | 0.86[ASN][1000 genomes] |
| rs4926378 | 0.87[ASN][1000 genomes] |
| rs6588337 | 0.95[ASN][1000 genomes] |
| rs6672452 | 1.00[ASN][1000 genomes] |
| rs6680906 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6694895 | 0.86[ASN][1000 genomes] |
| rs699229 | 0.93[AFR][1000 genomes] |
| rs72680408 | 0.95[AFR][1000 genomes] |
| rs7523563 | 0.86[ASN][1000 genomes] |
| rs7527747 | 0.97[ASN][1000 genomes] |
| rs7531243 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7534385 | 0.90[ASN][1000 genomes] |
| rs854260 | 0.93[AFR][1000 genomes] |
| rs854271 | 0.85[AFR][1000 genomes] |
| rs854272 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs854273 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9326085 | 0.97[ASN][1000 genomes] |
| rs9887767 | 0.80[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527722 | chr1:69212053-69323222 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:69274200-69278200 | Weak transcription | Brain Anterior Caudate | brain |
| 2 | chr1:69274400-69279800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
